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Post Genome Project Era Proteomics R&D Competition

January 2003
English or Japanese Version $1495.00.
159 Pages


Executive Overview

Proteomics is projected to grow from a $565 million market in 2001 to over $3.3 billion in 2006. This represents an average annual rate of growth of over 40%. The fastest growing segment of the proteomics market is expected to be the protein chip segment that will increase from $65.7 million in 2001 to over $723 million in 2006. This represents a 11-fold increase in market size in a six-year period and an average annual growth rate approaching 62%. Demand for proteomics services is expected to be strong throughout this time period with an average annual growth rate of over 50%. The rate of growth in this market segment is expected to slow after 2004 when next generation proteomics platforms are introduced. The proteomics platform market segment will remain the largest with a growth from $311 million in 2001 to approximately $1.7 billion in 2006.

Following the release of the first full draft of the human genome, the spotlight in biomedical research is shifting from genomics to proteomics as the key technology to transform information into pharmaceutical products. The need to improve the speed and efficiency of drug discovery is the primary driver of proteomics. Current step-wise screening and chemical optimization methods are both time-consuming (averaging 10-12 years from discovery to market) and expensive (estimated costs range from $500M-$750M). In addition, there is a high rate of failure in the clinical trials process due to toxicity or low efficacy of selected drug targets resulting in an increased interest in identification of biomarkers suitable to use in therapeutic planning and individualized medicine. It is hoped that both the rate of drug development and the rate of discovery of novel, informative biomarkers will dramatically improve using emerging proteomics platforms.

The use of proteomics capabilities has the potential to decrease overall spending per new chemical compound by approximately 30%, while decreasing the time investment by two years. The reality is that genomic technologies (use of DNA arrays and mRNA profiling) have resulted in a bottleneck in target validation. In order to realize the potential for efficiency, both genomics and proteomics need to be leveraged by applying these tools throughout validation to result in suitable and validated targets. This will require the construction of a systems biology framework to understand on a molecular level the disease mechanisms that often involve multiple targets and pathways.

All major pharmaceutical companies are searching for ways of accelerating drug discoveries. An important strategy to increase efficiency and reduce attrition in discovery is the ability to develop new drugs in parallel with disease biomarkers. With decreasing numbers of drugs in the clinical pipeline, Pharma (the pharmaceutical industry) is actively evaluating methods to increase the return on their R&D dollars by raising R&D productivity. Proteomics offers a clearer path toward this than genomics for several reasons. First, the same proteomics platforms can be used to test multiple biochemical properties. When the same target screen positive in multiple tests, it increases confidence in the role of that target in the disease of interest. Second, proteomics targets the biomolecules responsible for disease directly while genomics measures the levels of the messages encoding them, an indirect measurement of correlation. Third, proteomics platforms that are used in R&D for discovering drug targets can also be used in upstream in both pre-clinical R&D and post-clinical development. For example, the same tests on proteomic chips are being applied to in drug discovery, target validation, biomarker studies and drug candidate evaluation. Similarly, the hybrid sample preparation/MS analysis platforms under active development by several proteomics platform providers can be used both in discovery and in screening all the way through manufacturing QC to test product purity.

Table of Contents

1. EXECUTIVE OVERVIEW

2. THE MARKET OVERVIEW FOR PROTEOMICS IN PHARMACEUTICAL R&D
      DEFINITION OF PROTEOMICS MARKET
      RECENT INDUSTRY TRENDS THAT IMPACT PROTEOMICS MARKET

3. CURRENT PROTEOMICS MARKET PARTICIPANTS BY MARKET SEGMENT
      TECHNOLOGIES USED IN PROTEOMICS
         Emerging Proteomics Technologies
         Proteomics Chip Providers
         Proteomics Platform Providers
         Reagent or Antibody Providers
         Proteomics Informatics Tools and Database Providers
         Proteomic Service Providers
         Proteomics-based Drug Discovery Companies
      THE DRUG DEVELOPMENT PROCESS

4. DRIVERS OF PROTEOMICS MARKET
      PHARMACEUTICAL DRUG DISCOVERY R&D
      JAPAN TO PLAY KEY ROLE IN 'GOLDEN AGE OF DISCOVERY
      GENOMICS CONTRIBUTION TO DRUG DEVELOPMENT
      NEED FOR SYSTEMS APPROACH TO BIOLOGICAL RESEARCH
         Limitations of DNA Chips and Expression Profiling
         Technical Challenges with Protein Chips
         Post Human Genome Project Era Proteomics Databases

5. CASE STUDIES IN PROTEOMIC PLATFORMS FOR PHARMACEUTICAL R&D
      COLLABORATIVE LANDSCAPE IN PROTEOMICS: STRATEGIC ALLIANCES AND
      PARTNERSHIPS
      STRATEGIC ALLIANCES IN THE PROTEOMICS MARKET SEGMENTS
         Alliances with Platform Providers
         Alliances with Proteomics Arrays or Protein Chips
         Alliances with Informatics and Database Providers
         Alliances with Proteomic Reagent Providers
         Alliances with Proteomic Service Providers
      RECENT KEY STRATEGIC ALLIANCES AND PARTNERSHIPS
         Applied Biosystems & HTS Biosystems: An R&D and marketing collaboration
         Bruker Daltonics & Roche: Platform development collaboration
         Celera & SomaLogic: Technology access collaboration
         Ciphergen & Beckman Coulter: Robotic upgrade to leading platform
         Correlogic & Ciphergen: Diagnostic discovery collaboration
         Gyros & Affibody: Technology development strategic alliance
         MDS Proteomics & Thermo Finnigan: Platform development collaboration
         NeoGenesis & Mass General Hospital: Clinical collaboration
         Phylos & Upstate: Reagent development collaboration
         Large Scale Biology & NIEHS: Academic research collaboration
         Oxford GlycoSciences & BioInvent: Drug-discovery collaboration
         Proteome Systems & Itochu: An international joint venture

6. DRUG DISCOVERY PIPELINE ENGAGING PROTEOMICS

7. FUTURE OUTLOOK FOR PROTEOMICS MARKET
      FORECAST FOR PROTEOMICS BY MARKET SEGMENTS
         Platform Provider Market Segment
         Protein Chip Provider Segment
         Informatics Provider Market Segment
         Reagent Provider Market Segment
         Services Provider Market Segment
         Comparison of the Market Segment Forecasts
         Proteomics Market Size by Segment, 2002~2006
      TOTAL SIZE OF THE PROTEOMICS MARKET

8. FUTURE DIRECTIONS IN PROTEOMICS
      OVERVIEW OF PAST TRENDS
      RECENT DEVELOPMENTS IN GENOMICS THAT IMPACT PROTEOMICS
      INDICATORS OF FUTURE TRENDS IN PROTEOMICS

9. COMPANY PROFILES
      PROTEIN CHIP PROVIDERS
         Aspira Biosystems
         BioForce Nanosciences
         Biosite Discovery
         Glaucus Proteomics
         Milagen, Inc.
         Phylos
         Protometrix
      PLATFORM PROVIDERS
         20/20 GeneSystems, Inc
         Agilent Technologies
         Applied Biosystems
         Biacore AB
         Ciphergen
         CombiMatrix
         HTS Biosystems
         Kinexus
         Large Scale Biology
         Perkin-Elmer, Inc.
         Prolinx
         Proteome Systems Ltd.
         Randox
         SomaLogic
         Zeptosens
         Zyomyx, Inc.
      REAGENT PROVIDERS
         Bioinvent
         Cambridge Antibody Technology
         LYNX
         Upstate
      SERVICES PROVIDERS
         Affinium Pharmaceuticals
         GeneProt
         Protagen AG
         Syrrx
      INFORMATICS AND DATABASE PROVIDERS
         AxCell Biosciences
         Compugen
         GeneFormatics
         InforMax
         Iconix Pharmaceuticals
         LabVantage Solutions
         Matrix Science
         Nonlinear Dynamics
         ProteoMetrics
      PROTEOMICS-BASED DRUG DISCOVERY COMPANIES
         ACE BioSciences
         Archemix
         Beyond Genomics
         Celera Genomics
         MDS Proteomics, Inc.
         NeoGenesis Pharmaceuticals, Inc.
         Oxford GlycoSciences

10. LESSONS LEARNED AND EMERGING OPPORTUNITIES
      GENOMICS COMPANIES RESTRUCTURE AND FOCUS ON PROTEOMICS
      CHALLENGES OF DRUG DISCOVERY R&D PROCESS
      NEXT HOT DEVELOPMENT AREAS IN PROTEOMICS
      PROTEOMICS OPPORTUNITIES
      ROLE IN DRUG DISCOVERY
         Role in Toxicology and Toxicogenomics
         Role in Basic Research
      LARGE-SCALE PROTEOMICS TAKES OFF

11.SUMMARY

APPENDIX A - LISTING OF PROTEOMICS VENDORS
APPENDIX B - PROTEOMICS GLOSSARY
         2D-gel electrophoresis
         activity based proteomics
         antibody chips
         carbohydrate chips
         cell chips/ microarrays
         cell-based drug discovery
         cellular proteome
         chemical chips/ microarrays
         chemical genetics
         chemical proteomics
         computational proteomics
         compound validation
         functional proteomics
         functional protein arrays
         high-throughput proteomics
         Human Proteome Organization (HUPO)
         Human Proteomics Initiative
         in silico proteomics
         medicinal chemistry
         physiological proteomics
         protein-DNA interaction methods
         protein chips
         proteomics
         structural chemogenomics
         suspension arrays
         tissue biochips/microarrays
         toxicogenomics

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